PrecomputedKernelMatrixKernel

java.lang.Object
- weka.classifiers.functions.supportVector.Kernel
- - weka.classifiers.functions.supportVector.PrecomputedKernelMatrixKernel

All Implemented Interfaces:

java.io.Serializable, CapabilitiesHandler, Copyable, OptionHandler, RevisionHandler
```
public class PrecomputedKernelMatrixKernel
extends Kernel
implements Copyable
```
This kernel is based on a static kernel matrix that is read from a file. Instances must have a single nominal attribute (excluding the class). This attribute must be the first attribute in the file and its values are used to reference rows/columns in the kernel matrix. The second attribute must be the class attribute.
Valid options are:
```
 -D
  Enables debugging output (if available) to be printed.
  (default: off)
 
```
```
 -M <file name>
  The file name of the file that holds the kernel matrix.
  (default: kernelMatrix.matrix)
 
```
Version:

$Revision: 14534 $

Author:

Eibe Frank (eibe@cs.waikato.ac.nz)

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor and Description

PrecomputedKernelMatrixKernel()

Constructors
Constructor and Description
`PrecomputedKernelMatrixKernel()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`clean()` Frees the memory used by the kernel.
`java.lang.Object`	`copy()` Return a shallow copy of this kernel
`double`	`eval(int id1, int id2, Instance inst1)` Computes the result of the kernel function for two instances.
`Capabilities`	`getCapabilities()` Returns the Capabilities of this kernel.
`java.io.File`	`getKernelMatrixFile()` Gets the file containing the kernel matrix.
`java.lang.String[]`	`getOptions()` Gets the current settings of the Kernel.
`java.lang.String`	`getRevision()` Returns the revision string.
`java.lang.String`	`globalInfo()` Returns a string describing the kernel
`java.lang.String`	`kernelMatrixFileTipText()` Returns the tip text for this property
`java.util.Enumeration<Option>`	`listOptions()` Returns an enumeration describing the available options.
`int`	`numCacheHits()` Returns the number of dot product cache hits.
`int`	`numEvals()` Returns the number of kernel evaluation performed.
`void`	`setKernelMatrixFile(java.io.File f)` Sets the file holding the kernel matrix
`void`	`setOptions(java.lang.String[] options)` Parses a given list of options.
`java.lang.String`	`toString()` returns a string representation for the Kernel

Methods inherited from class weka.classifiers.functions.supportVector.Kernel
buildKernel, debugTipText, forName, getChecksTurnedOff, getDebug, getDoNotCheckCapabilities, makeCopies, makeCopy, setChecksTurnedOff, setDebug, setDoNotCheckCapabilities

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface weka.core.OptionHandler
makeCopy

- Constructor Detail
  - PrecomputedKernelMatrixKernel
```
public PrecomputedKernelMatrixKernel()
```
- Method Detail
  - copy
```
public java.lang.Object copy()
```
    Return a shallow copy of this kernel
    
    Specified by:
    
    copy in interface Copyable
    
    Returns:
    
    a shallow copy of this kernel
  - globalInfo
```
public java.lang.String globalInfo()
```
    Returns a string describing the kernel
    
    Specified by:
    
    globalInfo in class Kernel
    
    Returns:
    
    a description suitable for displaying in the explorer/experimenter gui
  - listOptions
```
public java.util.Enumeration<Option> listOptions()
```
    Returns an enumeration describing the available options.
    
    Specified by:
    
    listOptions in interface OptionHandler
    
    Overrides:
    
    listOptions in class Kernel
    
    Returns:
    
    an enumeration of all the available options.
  - setOptions
```
public void setOptions(java.lang.String[] options)
                throws java.lang.Exception
```
    Parses a given list of options.
    Valid options are:
```
 -D
  Enables debugging output (if available) to be printed.
  (default: off)
 
```
```
 -M <file name>
  The file name of the file that holds the kernel matrix.
  (default: kernelMatrix.matrix)
 
```
    Specified by:
    
    setOptions in interface OptionHandler
    
    Overrides:
    
    setOptions in class Kernel
    
    Parameters:
    
    options - the list of options as an array of strings
    
    Throws:
    
    java.lang.Exception - if an option is not supported
  - getOptions
```
public java.lang.String[] getOptions()
```
    Gets the current settings of the Kernel.
    
    Specified by:
    
    getOptions in interface OptionHandler
    
    Overrides:
    
    getOptions in class Kernel
    
    Returns:
    
    an array of strings suitable for passing to setOptions
  - eval
```
public double eval(int id1,
                   int id2,
                   Instance inst1)
            throws java.lang.Exception
```
    Description copied from class: Kernel
    
    Computes the result of the kernel function for two instances. If id1 == -1, eval use inst1 instead of an instance in the dataset.
    
    Specified by:
    
    eval in class Kernel
    
    Parameters:
    
    id1 - the index of instance 1
    
    id2 - the index of instance 2
    
    inst1 - the instance 1 object
    
    Returns:
    
    the dot product
    
    Throws:
    
    java.lang.Exception - if something goes wrong
  - getCapabilities
```
public Capabilities getCapabilities()
```
    Returns the Capabilities of this kernel.
    
    Specified by:
    
    getCapabilities in interface CapabilitiesHandler
    
    Overrides:
    
    getCapabilities in class Kernel
    
    Returns:
    
    the capabilities of this object
    
    See Also:
    
    Capabilities
  - setKernelMatrixFile
```
public void setKernelMatrixFile(java.io.File f)
```
    Sets the file holding the kernel matrix
    
    Parameters:
    
    f - the file holding the matrix
  - getKernelMatrixFile
```
public java.io.File getKernelMatrixFile()
```
    Gets the file containing the kernel matrix.
    
    Returns:
    
    the exponent value
  - kernelMatrixFileTipText
```
public java.lang.String kernelMatrixFileTipText()
```
    Returns the tip text for this property
    
    Returns:
    
    tip text for this property suitable for displaying in the explorer/experimenter gui
  - toString
```
public java.lang.String toString()
```
    returns a string representation for the Kernel
    
    Overrides:
    
    toString in class java.lang.Object
    
    Returns:
    
    a string representaiton of the kernel
  - clean
```
public void clean()
```
    Frees the memory used by the kernel. (Useful with kernels which use cache.) This function is called when the training is done. i.e. after that, eval will be called with id1 == -1.
    
    Specified by:
    
    clean in class Kernel
  - numEvals
```
public int numEvals()
```
    Returns the number of kernel evaluation performed.
    
    Specified by:
    
    numEvals in class Kernel
    
    Returns:
    
    the number of kernel evaluation performed.
  - numCacheHits
```
public int numCacheHits()
```
    Returns the number of dot product cache hits.
    
    Specified by:
    
    numCacheHits in class Kernel
    
    Returns:
    
    the number of dot product cache hits, or -1 if not supported by this kernel.
  - getRevision
```
public java.lang.String getRevision()
```
    Returns the revision string.
    
    Specified by:
    
    getRevision in interface RevisionHandler
    
    Overrides:
    
    getRevision in class Kernel
    
    Returns:
    
    the revision

Class PrecomputedKernelMatrixKernel

Constructor Summary

Method Summary

Methods inherited from class weka.classifiers.functions.supportVector.Kernel

Methods inherited from class java.lang.Object

Methods inherited from interface weka.core.OptionHandler

Constructor Detail

PrecomputedKernelMatrixKernel

Method Detail

copy

globalInfo

listOptions

setOptions

getOptions

eval

getCapabilities

setKernelMatrixFile

getKernelMatrixFile

kernelMatrixFileTipText

toString

clean

numEvals

numCacheHits

getRevision