weka.classifiers.bayes.net.search.global

Class K2

java.lang.Object

weka.classifiers.bayes.net.search.SearchAlgorithm

weka.classifiers.bayes.net.search.global.GlobalScoreSearchAlgorithm

weka.classifiers.bayes.net.search.global.K2

All Implemented Interfaces:

java.io.Serializable, OptionHandler, RevisionHandler, TechnicalInformationHandler

public class K2
extends GlobalScoreSearchAlgorithm
implements TechnicalInformationHandler

This Bayes Network learning algorithm uses a hill climbing algorithm restricted by an order on the variables.

For more information see:

G.F. Cooper, E. Herskovits (1990). A Bayesian method for constructing Bayesian belief networks from databases.

G. Cooper, E. Herskovits (1992). A Bayesian method for the induction of probabilistic networks from data. Machine Learning. 9(4):309-347.

Works with nominal variables and no missing values only.

BibTeX:

 @proceedings{Cooper1990,
    author = {G.F. Cooper and E. Herskovits},
    booktitle = {Proceedings of the Conference on Uncertainty in AI},
    pages = {86-94},
    title = {A Bayesian method for constructing Bayesian belief networks from databases},
    year = {1990}
 }
 
 @article{Cooper1992,
    author = {G. Cooper and E. Herskovits},
    journal = {Machine Learning},
    number = {4},
    pages = {309-347},
    title = {A Bayesian method for the induction of probabilistic networks from data},
    volume = {9},
    year = {1992}
 }
 

Valid options are:

 -N
  Initial structure is empty (instead of Naive Bayes)
 

 -P <nr of parents>
  Maximum number of parents
 

 -R
  Random order.
  (default false)
 

 -mbc
  Applies a Markov Blanket correction to the network structure, 
  after a network structure is learned. This ensures that all 
  nodes in the network are part of the Markov blanket of the 
  classifier node.
 

 -S [LOO-CV|k-Fold-CV|Cumulative-CV]
  Score type (LOO-CV,k-Fold-CV,Cumulative-CV)
 

 -Q
  Use probabilistic or 0/1 scoring.
  (default probabilistic scoring)
 

Version:

$Revision: 11247 $

Author:

Remco Bouckaert (rrb@xm.co.nz)

See Also:

Serialized Form

Field Summary

Fields inherited from class weka.classifiers.bayes.net.search.global.GlobalScoreSearchAlgorithm

TAGS_CV_TYPE

Constructor Summary

Constructors

Constructor and Description
K2()

Method Summary

Modifier and Type	Method and Description
boolean	getInitAsNaiveBayes() Gets whether to init as naive bayes
int	getMaxNrOfParents() Gets the max number of parents.
java.lang.String[]	getOptions() Gets the current settings of the search algorithm.
boolean	getRandomOrder() Get random order flag
java.lang.String	getRevision() Returns the revision string.
TechnicalInformation	getTechnicalInformation() Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.
java.lang.String	globalInfo() This will return a string describing the search algorithm.
java.util.Enumeration<Option>	listOptions() Returns an enumeration describing the available options.
java.lang.String	randomOrderTipText()
void	search(BayesNet bayesNet, Instances instances) search determines the network structure/graph of the network with the K2 algorithm, restricted by its initial structure (which can be an empty graph, or a Naive Bayes graph.
void	setInitAsNaiveBayes(boolean bInitAsNaiveBayes) Sets whether to init as naive bayes
void	setMaxNrOfParents(int nMaxNrOfParents) Sets the max number of parents
void	setOptions(java.lang.String[] options) Parses a given list of options.
void	setRandomOrder(boolean bRandomOrder) Set random order flag

Methods inherited from class weka.classifiers.bayes.net.search.global.GlobalScoreSearchAlgorithm

calcScore, calcScoreWithExtraParent, calcScoreWithMissingParent, calcScoreWithReversedParent, cumulativeCV, CVTypeTipText, getCVType, getMarkovBlanketClassifier, getUseProb, kFoldCV, leaveOneOutCV, markovBlanketClassifierTipText, setCVType, setMarkovBlanketClassifier, setUseProb, useProbTipText

Methods inherited from class weka.classifiers.bayes.net.search.SearchAlgorithm

buildStructure, initAsNaiveBayesTipText, maxNrOfParentsTipText, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface weka.core.OptionHandler

makeCopy

Constructor Detail

K2

public K2()

Method Detail

getTechnicalInformation

public TechnicalInformation getTechnicalInformation()

Returns an instance of a TechnicalInformation object, containing detailed information about the technical background of this class, e.g., paper reference or book this class is based on.

Specified by:

getTechnicalInformation in interface TechnicalInformationHandler

Returns:

the technical information about this class

search

public void search(BayesNet bayesNet,
                   Instances instances)
            throws java.lang.Exception

search determines the network structure/graph of the network with the K2 algorithm, restricted by its initial structure (which can be an empty graph, or a Naive Bayes graph.

Parameters:

bayesNet - the network

instances - the data to work with

Throws:

java.lang.Exception - if something goes wrong

setMaxNrOfParents

public void setMaxNrOfParents(int nMaxNrOfParents)

Sets the max number of parents

Parameters:

nMaxNrOfParents - the max number of parents

getMaxNrOfParents

public int getMaxNrOfParents()

Gets the max number of parents.

Returns:

the max number of parents

setInitAsNaiveBayes

public void setInitAsNaiveBayes(boolean bInitAsNaiveBayes)

Sets whether to init as naive bayes

Parameters:

bInitAsNaiveBayes - whether to init as naive bayes

getInitAsNaiveBayes

public boolean getInitAsNaiveBayes()

Gets whether to init as naive bayes

Returns:

whether to init as naive bayes

setRandomOrder

public void setRandomOrder(boolean bRandomOrder)

Set random order flag

Parameters:

bRandomOrder - the random order flag

getRandomOrder

public boolean getRandomOrder()

Get random order flag

Returns:

the random order flag

listOptions

public java.util.Enumeration<Option> listOptions()

Returns an enumeration describing the available options.

Specified by:

listOptions in interface OptionHandler

Overrides:

listOptions in class GlobalScoreSearchAlgorithm

Returns:

an enumeration of all the available options.

setOptions

public void setOptions(java.lang.String[] options)
                throws java.lang.Exception

Parses a given list of options.

Valid options are:

 -N
  Initial structure is empty (instead of Naive Bayes)
 

 -P <nr of parents>
  Maximum number of parents
 

 -R
  Random order.
  (default false)
 

 -mbc
  Applies a Markov Blanket correction to the network structure, 
  after a network structure is learned. This ensures that all 
  nodes in the network are part of the Markov blanket of the 
  classifier node.
 

 -S [LOO-CV|k-Fold-CV|Cumulative-CV]
  Score type (LOO-CV,k-Fold-CV,Cumulative-CV)
 

 -Q
  Use probabilistic or 0/1 scoring.
  (default probabilistic scoring)
 

Specified by:

setOptions in interface OptionHandler

Overrides:

setOptions in class GlobalScoreSearchAlgorithm

Parameters:

options - the list of options as an array of strings

Throws:

java.lang.Exception - if an option is not supported

getOptions

public java.lang.String[] getOptions()

Gets the current settings of the search algorithm.

Specified by:

getOptions in interface OptionHandler

Overrides:

getOptions in class GlobalScoreSearchAlgorithm

Returns:

an array of strings suitable for passing to setOptions

randomOrderTipText

public java.lang.String randomOrderTipText()

Returns:

a string to describe the RandomOrder option.

globalInfo

public java.lang.String globalInfo()

This will return a string describing the search algorithm.

Overrides:

globalInfo in class GlobalScoreSearchAlgorithm

Returns:

The string.

getRevision

public java.lang.String getRevision()

Returns the revision string.

Specified by:

getRevision in interface RevisionHandler

Overrides:

getRevision in class GlobalScoreSearchAlgorithm

Returns:

the revision